#================================================== #All numbers are READ count #================================================== Total records: 112025306 QC failed: 0 Optical/PCR duplicate: 27031510 Non primary hits 6618306 Unmapped reads: 8794340 mapq < mapq_cut (non-unique): 2805313 mapq >= mapq_cut (unique): 66775837 Read-1: 33396527 Read-2: 33379310 Reads map to '+': 33387975 Reads map to '-': 33387862 Non-splice reads: 48701507 Splice reads: 18074330 Reads mapped in proper pairs: 66752722 Proper-paired reads map to different chrom:0