#================================================== #All numbers are READ count #================================================== Total records: 141424966 QC failed: 0 Optical/PCR duplicate: 52096415 Non primary hits 30608852 Unmapped reads: 6522903 mapq < mapq_cut (non-unique): 2871707 mapq >= mapq_cut (unique): 49325089 Read-1: 24666104 Read-2: 24658985 Reads map to '+': 24662404 Reads map to '-': 24662685 Non-splice reads: 35596453 Splice reads: 13728636 Reads mapped in proper pairs: 49312684 Proper-paired reads map to different chrom:0