#================================================== #All numbers are READ count #================================================== Total records: 164780162 QC failed: 0 Optical/PCR duplicate: 77858185 Non primary hits 9124664 Unmapped reads: 10643469 mapq < mapq_cut (non-unique): 2645599 mapq >= mapq_cut (unique): 64508245 Read-1: 32257986 Read-2: 32250259 Reads map to '+': 32254151 Reads map to '-': 32254094 Non-splice reads: 44931774 Splice reads: 19576471 Reads mapped in proper pairs: 64497306 Proper-paired reads map to different chrom:0