#================================================== #All numbers are READ count #================================================== Total records: 73075818 QC failed: 0 Optical/PCR duplicate: 27827726 Non primary hits 6554030 Unmapped reads: 3049144 mapq < mapq_cut (non-unique): 1717124 mapq >= mapq_cut (unique): 33927794 Read-1: 16966213 Read-2: 16961581 Reads map to '+': 16963854 Reads map to '-': 16963940 Non-splice reads: 24684875 Splice reads: 9242919 Reads mapped in proper pairs: 33920654 Proper-paired reads map to different chrom:0