#================================================== #All numbers are READ count #================================================== Total records: 79129266 QC failed: 0 Optical/PCR duplicate: 29644509 Non primary hits 4668554 Unmapped reads: 4177960 mapq < mapq_cut (non-unique): 1658943 mapq >= mapq_cut (unique): 38979300 Read-1: 19491760 Read-2: 19487540 Reads map to '+': 19489635 Reads map to '-': 19489665 Non-splice reads: 28067798 Splice reads: 10911502 Reads mapped in proper pairs: 38972508 Proper-paired reads map to different chrom:0