#================================================== #All numbers are READ count #================================================== Total records: 104437225 QC failed: 0 Optical/PCR duplicate: 62148486 Non primary hits 7603137 Unmapped reads: 7746249 mapq < mapq_cut (non-unique): 1496177 mapq >= mapq_cut (unique): 25443176 Read-1: 12729313 Read-2: 12713863 Reads map to '+': 12721547 Reads map to '-': 12721629 Non-splice reads: 16820978 Splice reads: 8622198 Reads mapped in proper pairs: 25422392 Proper-paired reads map to different chrom:0