#================================================== #All numbers are READ count #================================================== Total records: 104245815 QC failed: 0 Optical/PCR duplicate: 43830086 Non primary hits 7688165 Unmapped reads: 8659603 mapq < mapq_cut (non-unique): 2098655 mapq >= mapq_cut (unique): 41969306 Read-1: 20987700 Read-2: 20981606 Reads map to '+': 20984651 Reads map to '-': 20984655 Non-splice reads: 31984457 Splice reads: 9984849 Reads mapped in proper pairs: 41954148 Proper-paired reads map to different chrom:0