#================================================== #All numbers are READ count #================================================== Total records: 76534717 QC failed: 0 Optical/PCR duplicate: 39942409 Non primary hits 5626971 Unmapped reads: 1446782 mapq < mapq_cut (non-unique): 1517651 mapq >= mapq_cut (unique): 28000904 Read-1: 14002129 Read-2: 13998775 Reads map to '+': 14000521 Reads map to '-': 14000383 Non-splice reads: 18754658 Splice reads: 9246246 Reads mapped in proper pairs: 27992444 Proper-paired reads map to different chrom:0