#================================================== #All numbers are READ count #================================================== Total records: 77600502 QC failed: 0 Optical/PCR duplicate: 31193851 Non primary hits 5394960 Unmapped reads: 6163986 mapq < mapq_cut (non-unique): 1549588 mapq >= mapq_cut (unique): 33298117 Read-1: 16652633 Read-2: 16645484 Reads map to '+': 16649094 Reads map to '-': 16649023 Non-splice reads: 23903131 Splice reads: 9394986 Reads mapped in proper pairs: 33288874 Proper-paired reads map to different chrom:0