#================================================== #All numbers are READ count #================================================== Total records: 97040842 QC failed: 0 Optical/PCR duplicate: 44101170 Non primary hits 6875830 Unmapped reads: 2364129 mapq < mapq_cut (non-unique): 1947783 mapq >= mapq_cut (unique): 41751930 Read-1: 20877652 Read-2: 20874278 Reads map to '+': 20875958 Reads map to '-': 20875972 Non-splice reads: 29641550 Splice reads: 12110380 Reads mapped in proper pairs: 41745648 Proper-paired reads map to different chrom:0