#================================================== #All numbers are READ count #================================================== Total records: 76668071 QC failed: 0 Optical/PCR duplicate: 20970018 Non primary hits 5698467 Unmapped reads: 3771281 mapq < mapq_cut (non-unique): 2015354 mapq >= mapq_cut (unique): 44212951 Read-1: 22110194 Read-2: 22102757 Reads map to '+': 22106368 Reads map to '-': 22106583 Non-splice reads: 31200094 Splice reads: 13012857 Reads mapped in proper pairs: 44201460 Proper-paired reads map to different chrom:0