#================================================== #All numbers are READ count #================================================== Total records: 81346111 QC failed: 0 Optical/PCR duplicate: 41222544 Non primary hits 5908841 Unmapped reads: 3460168 mapq < mapq_cut (non-unique): 1603687 mapq >= mapq_cut (unique): 29150871 Read-1: 14578428 Read-2: 14572443 Reads map to '+': 14575311 Reads map to '-': 14575560 Non-splice reads: 19767315 Splice reads: 9383556 Reads mapped in proper pairs: 29139704 Proper-paired reads map to different chrom:0