#================================================== #All numbers are READ count #================================================== Total records: 89170338 QC failed: 0 Optical/PCR duplicate: 31401095 Non primary hits 7224324 Unmapped reads: 4452184 mapq < mapq_cut (non-unique): 2128359 mapq >= mapq_cut (unique): 43964376 Read-1: 21985615 Read-2: 21978761 Reads map to '+': 21982179 Reads map to '-': 21982197 Non-splice reads: 30581551 Splice reads: 13382825 Reads mapped in proper pairs: 43955360 Proper-paired reads map to different chrom:0