#================================================== #All numbers are READ count #================================================== Total records: 60154399 QC failed: 0 Optical/PCR duplicate: 19677000 Non primary hits 3576599 Unmapped reads: 1856902 mapq < mapq_cut (non-unique): 1452584 mapq >= mapq_cut (unique): 33591314 Read-1: 16798118 Read-2: 16793196 Reads map to '+': 16795681 Reads map to '-': 16795633 Non-splice reads: 24226278 Splice reads: 9365036 Reads mapped in proper pairs: 33583758 Proper-paired reads map to different chrom:0