#================================================== #All numbers are READ count #================================================== Total records: 103173412 QC failed: 0 Optical/PCR duplicate: 39278975 Non primary hits 6744484 Unmapped reads: 7438063 mapq < mapq_cut (non-unique): 2251070 mapq >= mapq_cut (unique): 47460820 Read-1: 23736334 Read-2: 23724486 Reads map to '+': 23730296 Reads map to '-': 23730524 Non-splice reads: 32391780 Splice reads: 15069040 Reads mapped in proper pairs: 47446246 Proper-paired reads map to different chrom:0