#================================================== #All numbers are READ count #================================================== Total records: 75150059 QC failed: 0 Optical/PCR duplicate: 25777666 Non primary hits 4375797 Unmapped reads: 4806065 mapq < mapq_cut (non-unique): 1779175 mapq >= mapq_cut (unique): 38411356 Read-1: 19210445 Read-2: 19200911 Reads map to '+': 19205581 Reads map to '-': 19205775 Non-splice reads: 26481900 Splice reads: 11929456 Reads mapped in proper pairs: 38399026 Proper-paired reads map to different chrom:0