#================================================== #All numbers are READ count #================================================== Total records: 65733537 QC failed: 0 Optical/PCR duplicate: 26874941 Non primary hits 4018201 Unmapped reads: 2349751 mapq < mapq_cut (non-unique): 1427901 mapq >= mapq_cut (unique): 31062743 Read-1: 15533377 Read-2: 15529366 Reads map to '+': 15531267 Reads map to '-': 15531476 Non-splice reads: 22841400 Splice reads: 8221343 Reads mapped in proper pairs: 31056546 Proper-paired reads map to different chrom:0