#================================================== #All numbers are READ count #================================================== Total records: 69676576 QC failed: 0 Optical/PCR duplicate: 22155523 Non primary hits 3853330 Unmapped reads: 2825283 mapq < mapq_cut (non-unique): 1630221 mapq >= mapq_cut (unique): 39212219 Read-1: 19608914 Read-2: 19603305 Reads map to '+': 19606072 Reads map to '-': 19606147 Non-splice reads: 27514523 Splice reads: 11697696 Reads mapped in proper pairs: 39203414 Proper-paired reads map to different chrom:0