#================================================== #All numbers are READ count #================================================== Total records: 101043676 QC failed: 0 Optical/PCR duplicate: 47027781 Non primary hits 7775944 Unmapped reads: 2084512 mapq < mapq_cut (non-unique): 2275112 mapq >= mapq_cut (unique): 41880327 Read-1: 20942598 Read-2: 20937729 Reads map to '+': 20940198 Reads map to '-': 20940129 Non-splice reads: 27095943 Splice reads: 14784384 Reads mapped in proper pairs: 41868888 Proper-paired reads map to different chrom:0