#================================================== #All numbers are READ count #================================================== Total records: 72204890 QC failed: 0 Optical/PCR duplicate: 22921306 Non primary hits 4051924 Unmapped reads: 3222682 mapq < mapq_cut (non-unique): 1697830 mapq >= mapq_cut (unique): 40311148 Read-1: 20157946 Read-2: 20153202 Reads map to '+': 20155534 Reads map to '-': 20155614 Non-splice reads: 27770823 Splice reads: 12540325 Reads mapped in proper pairs: 40303870 Proper-paired reads map to different chrom:0