#================================================== #All numbers are READ count #================================================== Total records: 65986247 QC failed: 0 Optical/PCR duplicate: 17868070 Non primary hits 4472961 Unmapped reads: 3511822 mapq < mapq_cut (non-unique): 1695106 mapq >= mapq_cut (unique): 38438288 Read-1: 19222757 Read-2: 19215531 Reads map to '+': 19219146 Reads map to '-': 19219142 Non-splice reads: 27223877 Splice reads: 11214411 Reads mapped in proper pairs: 38427518 Proper-paired reads map to different chrom:0