#================================================== #All numbers are READ count #================================================== Total records: 116489211 QC failed: 0 Optical/PCR duplicate: 57737667 Non primary hits 7932643 Unmapped reads: 2532034 mapq < mapq_cut (non-unique): 2399608 mapq >= mapq_cut (unique): 45887259 Read-1: 22946539 Read-2: 22940720 Reads map to '+': 22943462 Reads map to '-': 22943797 Non-splice reads: 29688453 Splice reads: 16198806 Reads mapped in proper pairs: 45874886 Proper-paired reads map to different chrom:0