#================================================== #All numbers are READ count #================================================== Total records: 127346065 QC failed: 0 Optical/PCR duplicate: 65261882 Non primary hits 9843105 Unmapped reads: 5289045 mapq < mapq_cut (non-unique): 2260019 mapq >= mapq_cut (unique): 44692014 Read-1: 22350624 Read-2: 22341390 Reads map to '+': 22345970 Reads map to '-': 22346044 Non-splice reads: 31714207 Splice reads: 12977807 Reads mapped in proper pairs: 44680218 Proper-paired reads map to different chrom:0