#================================================== #All numbers are READ count #================================================== Total records: 147876948 QC failed: 0 Optical/PCR duplicate: 66905848 Non primary hits 10359952 Unmapped reads: 3763335 mapq < mapq_cut (non-unique): 2918384 mapq >= mapq_cut (unique): 63929429 Read-1: 31966739 Read-2: 31962690 Reads map to '+': 31964673 Reads map to '-': 31964756 Non-splice reads: 45325269 Splice reads: 18604160 Reads mapped in proper pairs: 63921820 Proper-paired reads map to different chrom:0