#================================================== #All numbers are READ count #================================================== Total records: 70400771 QC failed: 0 Optical/PCR duplicate: 22988721 Non primary hits 5319497 Unmapped reads: 3529367 mapq < mapq_cut (non-unique): 1717488 mapq >= mapq_cut (unique): 36845698 Read-1: 18425955 Read-2: 18419743 Reads map to '+': 18422825 Reads map to '-': 18422873 Non-splice reads: 26080844 Splice reads: 10764854 Reads mapped in proper pairs: 36836632 Proper-paired reads map to different chrom:0