#================================================== #All numbers are READ count #================================================== Total records: 111763302 QC failed: 0 Optical/PCR duplicate: 65117821 Non primary hits 7209864 Unmapped reads: 1963701 mapq < mapq_cut (non-unique): 1829955 mapq >= mapq_cut (unique): 35641961 Read-1: 17823013 Read-2: 17818948 Reads map to '+': 17820962 Reads map to '-': 17820999 Non-splice reads: 24248392 Splice reads: 11393569 Reads mapped in proper pairs: 35630836 Proper-paired reads map to different chrom:0