#================================================== #All numbers are READ count #================================================== Total records: 282036941 QC failed: 0 Optical/PCR duplicate: 188429085 Non primary hits 18908763 Unmapped reads: 11107986 mapq < mapq_cut (non-unique): 3015627 mapq >= mapq_cut (unique): 60575480 Read-1: 30292346 Read-2: 30283134 Reads map to '+': 30287678 Reads map to '-': 30287802 Non-splice reads: 41242871 Splice reads: 19332609 Reads mapped in proper pairs: 60562796 Proper-paired reads map to different chrom:0