#================================================== #All numbers are READ count #================================================== Total records: 83360229 QC failed: 0 Optical/PCR duplicate: 42206831 Non primary hits 5171721 Unmapped reads: 6342294 mapq < mapq_cut (non-unique): 1535027 mapq >= mapq_cut (unique): 28104356 Read-1: 14057224 Read-2: 14047132 Reads map to '+': 14052167 Reads map to '-': 14052189 Non-splice reads: 18535734 Splice reads: 9568622 Reads mapped in proper pairs: 28082958 Proper-paired reads map to different chrom:0