#================================================== #All numbers are READ count #================================================== Total records: 74956951 QC failed: 0 Optical/PCR duplicate: 31106099 Non primary hits 6066965 Unmapped reads: 5827578 mapq < mapq_cut (non-unique): 1664133 mapq >= mapq_cut (unique): 30292176 Read-1: 15154891 Read-2: 15137285 Reads map to '+': 15145912 Reads map to '-': 15146264 Non-splice reads: 21452506 Splice reads: 8839670 Reads mapped in proper pairs: 30260772 Proper-paired reads map to different chrom:0