#================================================== #All numbers are READ count #================================================== Total records: 272914572 QC failed: 0 Optical/PCR duplicate: 144925075 Non primary hits 19182540 Unmapped reads: 11959526 mapq < mapq_cut (non-unique): 4529919 mapq >= mapq_cut (unique): 92317512 Read-1: 46166399 Read-2: 46151113 Reads map to '+': 46158465 Reads map to '-': 46159047 Non-splice reads: 60911924 Splice reads: 31405588 Reads mapped in proper pairs: 92291490 Proper-paired reads map to different chrom:0