#================================================== #All numbers are READ count #================================================== Total records: 116821096 QC failed: 0 Optical/PCR duplicate: 46425621 Non primary hits 9260844 Unmapped reads: 21937621 mapq < mapq_cut (non-unique): 2025639 mapq >= mapq_cut (unique): 37171371 Read-1: 18600334 Read-2: 18571037 Reads map to '+': 18585433 Reads map to '-': 18585938 Non-splice reads: 25848205 Splice reads: 11323166 Reads mapped in proper pairs: 37129104 Proper-paired reads map to different chrom:0