#================================================== #All numbers are READ count #================================================== Total records: 91169364 QC failed: 0 Optical/PCR duplicate: 73399194 Non primary hits 6365220 Unmapped reads: 1352324 mapq < mapq_cut (non-unique): 620698 mapq >= mapq_cut (unique): 9431928 Read-1: 4717297 Read-2: 4714631 Reads map to '+': 4716012 Reads map to '-': 4715916 Non-splice reads: 6422961 Splice reads: 3008967 Reads mapped in proper pairs: 9427208 Proper-paired reads map to different chrom:0