#================================================== #All numbers are READ count #================================================== Total records: 81547256 QC failed: 0 Optical/PCR duplicate: 27618108 Non primary hits 4432360 Unmapped reads: 6827319 mapq < mapq_cut (non-unique): 1710111 mapq >= mapq_cut (unique): 40959358 Read-1: 20483560 Read-2: 20475798 Reads map to '+': 20479713 Reads map to '-': 20479645 Non-splice reads: 28278458 Splice reads: 12680900 Reads mapped in proper pairs: 40949124 Proper-paired reads map to different chrom:0