#================================================== #All numbers are READ count #================================================== Total records: 77746776 QC failed: 0 Optical/PCR duplicate: 29248023 Non primary hits 5102514 Unmapped reads: 4379369 mapq < mapq_cut (non-unique): 1753336 mapq >= mapq_cut (unique): 37263534 Read-1: 18636743 Read-2: 18626791 Reads map to '+': 18631785 Reads map to '-': 18631749 Non-splice reads: 25833070 Splice reads: 11430464 Reads mapped in proper pairs: 37251438 Proper-paired reads map to different chrom:0