#================================================== #All numbers are READ count #================================================== Total records: 123105111 QC failed: 0 Optical/PCR duplicate: 44788736 Non primary hits 6600015 Unmapped reads: 9399940 mapq < mapq_cut (non-unique): 2536820 mapq >= mapq_cut (unique): 59779600 Read-1: 29894223 Read-2: 29885377 Reads map to '+': 29889655 Reads map to '-': 29889945 Non-splice reads: 41839277 Splice reads: 17940323 Reads mapped in proper pairs: 59766422 Proper-paired reads map to different chrom:0