#================================================== #All numbers are READ count #================================================== Total records: 75562325 QC failed: 0 Optical/PCR duplicate: 25598383 Non primary hits 4374571 Unmapped reads: 9694352 mapq < mapq_cut (non-unique): 1539372 mapq >= mapq_cut (unique): 34355647 Read-1: 17180903 Read-2: 17174744 Reads map to '+': 17177851 Reads map to '-': 17177796 Non-splice reads: 24222335 Splice reads: 10133312 Reads mapped in proper pairs: 34347106 Proper-paired reads map to different chrom:0