#================================================== #All numbers are READ count #================================================== Total records: 119860530 QC failed: 0 Optical/PCR duplicate: 37010981 Non primary hits 6392050 Unmapped reads: 8777822 mapq < mapq_cut (non-unique): 2687258 mapq >= mapq_cut (unique): 64992419 Read-1: 32501383 Read-2: 32491036 Reads map to '+': 32496105 Reads map to '-': 32496314 Non-splice reads: 45074049 Splice reads: 19918370 Reads mapped in proper pairs: 64977628 Proper-paired reads map to different chrom:0