#================================================== #All numbers are READ count #================================================== Total records: 79537768 QC failed: 0 Optical/PCR duplicate: 31175084 Non primary hits 4019952 Unmapped reads: 4317470 mapq < mapq_cut (non-unique): 1580494 mapq >= mapq_cut (unique): 38444768 Read-1: 19225572 Read-2: 19219196 Reads map to '+': 19222317 Reads map to '-': 19222451 Non-splice reads: 26388130 Splice reads: 12056638 Reads mapped in proper pairs: 38436246 Proper-paired reads map to different chrom:0