#================================================== #All numbers are READ count #================================================== Total records: 80095379 QC failed: 0 Optical/PCR duplicate: 25812584 Non primary hits 4109397 Unmapped reads: 3068627 mapq < mapq_cut (non-unique): 1783040 mapq >= mapq_cut (unique): 45321731 Read-1: 22663306 Read-2: 22658425 Reads map to '+': 22660739 Reads map to '-': 22660992 Non-splice reads: 32331892 Splice reads: 12989839 Reads mapped in proper pairs: 45313522 Proper-paired reads map to different chrom:0