#================================================== #All numbers are READ count #================================================== Total records: 135283291 QC failed: 0 Optical/PCR duplicate: 91099998 Non primary hits 15167229 Unmapped reads: 3035444 mapq < mapq_cut (non-unique): 1619544 mapq >= mapq_cut (unique): 24361076 Read-1: 12180958 Read-2: 12180118 Reads map to '+': 12180502 Reads map to '-': 12180574 Non-splice reads: 16293004 Splice reads: 8068072 Reads mapped in proper pairs: 24357196 Proper-paired reads map to different chrom:0