2025-03-28 12:30 PM [DEBUG] grz_cli.cli: Logging setup complete. 2025-03-28 12:30 PM [DEBUG] grz_cli.cli: Logging setup complete. 2025-03-28 12:30 PM [INFO] grz_cli.cli: Starting upload... 2025-03-28 12:30 PM [DEBUG] grz_cli.parser.Worker: Threads: 4 2025-03-28 12:30 PM [DEBUG] grz_cli.parser.Worker: Metadata directory: /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/metadata 2025-03-28 12:30 PM [DEBUG] grz_cli.parser.Worker: Files directory: /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/files 2025-03-28 12:30 PM [INFO] grz_cli.parser.Worker: Encrypted files directory: /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files 2025-03-28 12:30 PM [INFO] grz_cli.parser.Worker: Log directory: /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/logs 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_1_R1.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_1_R1.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7035_1_R1.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_1_R2.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_1_R2.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7035_1_R2.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_2_R1.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_2_R1.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7035_2_R1.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_2_R2.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7035_2_R2.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7035_2_R2.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_1_R1.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_1_R1.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7086_1_R1.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_1_R2.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_1_R2.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7086_1_R2.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_2_R1.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_2_R1.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7086_2_R1.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_2_R2.fastq.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/NIST7086_2_R2.fastq.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/NIST7086_2_R2.fastq.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/panel.bed.gz.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/panel.bed.gz.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/panel.bed.gz.c4gh') 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: state for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/panel_vcf.vcf.c4gh: {'upload_successful': True} 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: File '/data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/encrypted_files/donor_001/panel_vcf.vcf.c4gh' already uploaded (at 'a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/files/donor_001/panel_vcf.vcf.c4gh') 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: Uploading /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/metadata/metadata.v1.1.1-r2.json to a2b6c3d9e8f7123456789abcdef0123456789abcdef0123456789abcdef01234/metadata/metadata.json... 2025-03-28 12:30 PM [DEBUG] grz_cli.upload.S3BotoUploadWorker: Using a chunksize of: 8.0MiB, results in 0.0011615753173828125 chunks 2025-03-28 12:30 PM [INFO] grz_cli.upload.S3BotoUploadWorker: Upload complete for /data/ceph/ssd/public_webshare/public/grz-example-submissions/Panel/metadata/metadata.json. 2025-03-28 12:30 PM [INFO] grz_cli.cli: Upload finished!